Details - SCIdb

General information

Overview

SCIdb Data ID: SCI00103

Species: Mouse

Region: T9

Condition: Disease

SCI stage: 7dpi

Gender: Female

Age: 8-10 week old

Datasets from the same experiment

SCI00101 | SCI00102 | SCI00103 | SCI00104 | SCI00105 | SCI00106 |

Dataset information

Number of AD associated cells: 7439

Number of control-like cells: 0

Number of identified cell types: 14

Dataset source:

Title: Microglia coordinate cellular interactions during spinal cord repair in mice

Methodology: Single cell RNAseq

Protocol: 10X Genomics

GEO/synapse number: GSE196928

Pubmed ID: 35835751

Citation: Brennan, H Faith. et al. Microglia coordinate cellular interactions during spinal cord repair in mice. nature communication 13, 4096 (2022).

Cell clustering

Cell type & subcluster:

ARI score: 1

Gene expression

Point size:

4

Please enter a gene symbol.

Differential expression (DE) / Gene set enrichment

Group:

Find differentially expressed genes in each cell type by comparing it to all of the others.

Cell type of interest:

Log2 fold-change cutoff:

0.5

Adjusted p-value cutoff:

10^-6

10^-5

10^-4

10^-3

0.01

0.05

0.1

1

DE direction:

All

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Agt	4.07939	0.609	0.008	0.00e+0
Ntsr2	3.9965	0.696	0.008	0.00e+0
Ttyh1	3.87625	0.71	0.017	0.00e+0
Slc6a11	3.38601	0.551	0.003	0.00e+0
Bcan	3.23573	0.667	0.014	0.00e+0
Itih3	3.15344	0.522	0.002	0.00e+0
Fgfr3	2.9652	0.565	0.008	0.00e+0
Mmd2	2.94759	0.493	0.007	0.00e+0
Slc7a10	2.84777	0.551	0.002	0.00e+0
Gjb6	2.49584	0.449	0.004	0.00e+0
Paqr6	2.41132	0.406	0.002	0.00e+0
Lcat	2.15634	0.377	0.003	0.00e+0
Chl1	1.90097	0.362	0.003	0.00e+0