Details - SCIdb

General information

Overview

SCIdb Data ID: SCI00105

Species: Mouse

Region: T9

Condition: Disease

SCI stage: 28dpi

Gender: Female

Age: 8-10 week old

Datasets from the same experiment

SCI00101 | SCI00102 | SCI00103 | SCI00104 | SCI00105 | SCI00106 |

Dataset information

Number of AD associated cells: 9846

Number of control-like cells: 2

Number of identified cell types: 14

Dataset source:

Title: Microglia coordinate cellular interactions during spinal cord repair in mice

Methodology: Single cell RNAseq

Protocol: 10X Genomics

GEO/synapse number: GSE196928

Pubmed ID: 35835751

Citation: Brennan, H Faith. et al. Microglia coordinate cellular interactions during spinal cord repair in mice. nature communication 13, 4096 (2022).

Cell clustering

Cell type & subcluster:

ARI score: 1

Gene expression

Point size:

4

Please enter a gene symbol.

Differential expression (DE) / Gene set enrichment

Group:

Find differentially expressed genes in each cell type by comparing it to all of the others.

Cell type of interest:

Log2 fold-change cutoff:

0.5

Adjusted p-value cutoff:

10^-6

10^-5

10^-4

10^-3

0.01

0.05

0.1

1

DE direction:

All

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Slc1a2	5.80533	0.918	0.047	0.00e+0
Atp1a2	5.54092	0.959	0.088	0.00e+0
Atp1b2	5.04528	0.873	0.038	0.00e+0
Aldoc	5.02318	0.767	0.034	0.00e+0
Slc4a4	4.61342	0.845	0.035	0.00e+0
Sparcl1	4.5384	0.833	0.082	0.00e+0
Aqp4	4.53515	0.767	0.026	0.00e+0
Gpr37l1	4.52589	0.833	0.025	0.00e+0
Ndrg2	4.40548	0.812	0.039	0.00e+0
Ntsr2	4.23219	0.747	0.011	0.00e+0
Gja1	4.18519	0.698	0.026	0.00e+0
Cldn10	3.95566	0.657	0.007	0.00e+0
Ppap2b	3.94489	0.731	0.052	0.00e+0
Bcan	3.82582	0.759	0.009	0.00e+0
Slc6a1	3.79113	0.673	0.013	0.00e+0