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Overview

SCIdb Data ID: SCI00106

Species: Mouse

Region: T9

Condition: Disease

SCI stage: 28dpi

Gender: Female

Age: 8-10 week old

Datasets from the same experiment
SCI00101 | SCI00102 | SCI00103 | SCI00104 | SCI00105 | SCI00106 |
Dataset information

Number of AD associated cells: 940

Number of control-like cells: 0

Number of identified cell types: 14

Dataset source:

Title: Microglia coordinate cellular interactions during spinal cord repair in mice

Methodology: Single cell RNAseq

Protocol: 10X Genomics

GEO/synapse number: GSE196928

Pubmed ID: 35835751

Citation: Brennan, H Faith. et al. Microglia coordinate cellular interactions during spinal cord repair in mice. nature communication 13, 4096 (2022).

Cell clustering

Cell type & subcluster:

ARI score: 1

Gene expression

Point size:

4

Please enter a gene symbol.

Differential expression (DE) / Gene set enrichment

Group:

Find differentially expressed genes in each cell type by comparing it to all of the others.

Cell type of interest:

Log2 fold-change cutoff:

0.5

Adjusted p-value cutoff:

10^-6
10^-5
10^-4
10^-3
0.01
0.05
0.1
1
DE direction:
Rows per page:
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