scRNA-seq & snRNAseq dataset
Integrated Atlas Data can be download from Google Drive - PKD Atlas Data
IMPORTANT: If you are unable to download, please try to right click the ‘download’ link and select ‘save link as’.
Current the data download link for each sample will be available after paper published.
| scPKD ID | GSE ID | Species | Disease | Sex | Age |
|---|---|---|---|---|---|
| PKD00101 | GSM5627690 | Human | Healthy | M | 54 |
| PKD00102 | GSM5627691 | Human | Healthy | M | 62 |
| PKD00103 | GSM5627692 | Human | Healthy | F | 61 |
| PKD00104 | GSM5627693 | Human | Healthy | M | 50 |
| PKD00105 | GSM5627694 | Human | Healthy | F | 52 |
| PKD00106 | GSM5627695 | Human | PKD | F | 50-60 |
| PKD00107 | GSM5627696 | Human | PKD | F | 50-60 |
| PKD00108 | GSM5627697 | Human | PKD | F | 50-60 |
| PKD00109 | GSM5627698 | Human | PKD | M | 50-60 |
| PKD00110 | GSM5627699 | Human | PKD | F | 60-70 |
| PKD00111 | GSM5627700 | Human | PKD | M | 30-40 |
| PKD00112 | GSM5627701 | Human | PKD | M | 40-50 |
| PKD00113 | GSM5627702 | Human | PKD | M | 40-50 |
| PKD00201 | GSM8291973 | Mouse | Healthy | M | D66 |
| PKD00202 | GSM8291976 | Mouse | Healthy | M | D66 |
| PKD00203 | GSM8291977 | Mouse | Healthy | M | D100 |
| PKD00204 | GSM8291979 | Mouse | Healthy | M | D100 |
| PKD00205 | GSM8291981 | Mouse | Healthy | M | D100 |
| PKD00206 | GSM8291986 | Mouse | Healthy | M | D130 |
| PKD00207 | GSM8291987 | Mouse | Healthy | M | D130 |
| PKD00208 | GSM8291988 | Mouse | Healthy | M | D130 |
| PKD00209 | GSM8291974 | Mouse | PKD | M | D66 |
| PKD00210 | GSM8291975 | Mouse | PKD | M | D66 |
| PKD00211 | GSM8291978 | Mouse | PKD | M | D100 |
| PKD00212 | GSM8291980 | Mouse | PKD | M | D100 |
| PKD00213 | GSM8291982 | Mouse | PKD | M | D100 |
| PKD00214 | GSM8291983 | Mouse | PKD | M | D130 |
| PKD00215 | GSM8291984 | Mouse | PKD | M | D130 |
| PKD00216 | GSM8291985 | Mouse | PKD | M | D130 |
Source code
- Front-end: https://github.com/OSU-BMBL/pkd-database
- Back-end: https://github.com/OSU-BMBL/pkd-database-backend
- STAR Protocols: https://github.com/OSU-BMBL/ssread-protocol