ssREAD
A Single-cell and Spatial RNA-Seq Database for Alzheimer's Disease
Datasets
Over 7,300,000 cells and 382 Spatial Transcriptomics samples from 85 Human & Mouse studies.
- Detailed annotations including cell types and spatial layers
- Differential gene expressions and functional enrichment analysis
- Spatially variable genes and deconvolution with single-cell datasets
Search
Query results over 67 single-cell & single-nuclei RNA-seq and 18 spatial studies.
- Search differentially expressed genes
- Find overlapping DEGs from multiple comparisons
Downloads
Download all raw & processed datasets.
- Raw gene expression & authors' label
- High quality processed data & metadata
- Text format or objects can be directly loaded into Seurat / Scanpy
Interactive visualizations
User-friendly web server to provide comprehensive analysis interpretations and filters support multiple selections
- Scatter plots for clusters, cell types, and spatial layers
- Feature plots and violin plots for gene expression profile
- Real-time gene set enrichment analysis