General information
Overview

Data ID: AD00202

Species: Human

Region: Entorhinal Cortex

Condition: Control

Braak stage: NA

Sex: Female

Age: mean age 77.6, range 67.3-91 years

Related datasets
Dataset information

Number of cells: 1122

Number of identified cell types: 6

Dataset source

Title: A Single-Cell Atlas of Entorhinal Cortex From Individuals With Alzheimer's Disease Reveals Cell-Type-Specific Gene Expression Regulation

Methodology: Single-nucleus RNA-seq

Protocol: DroNc-seq

Public Data ID: GSE138852

Pubmed: 31768052

DOI: 10.1038/s41593-019-0539-4

Cell clustering

Cell type & subcluster:

Total cells in the plot: 1122

Gene expression

Point size:

4

Please enter a gene symbol.

Differential expression (DE) / Gene set enrichment

Note: The MAST package were used to calculate DEGs on normalized gene expression data (parameter: log2FC > 0.25, adj.p-value < 0.05).

Group:

Find differentially expressed genes in each cell type by comparing it to all of the others.

Cell type of interest:

Log2 fold-change cutoff:

0.5

Adjusted p-value cutoff:

10^-6
10^-5
10^-4
10^-3
0.01
0.05
0.1
1
DE direction:

Total genes returned from query without filtering: 1280

Total genes in the table after filtering: 0

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