Title: Neuroinflammatory astrocyte subtypes in the mouse brain
Authors: Philip Hasel, Indigo V. L. Rose, Jessica S. Sadick, Rachel D. Kim & Shane A. Liddelow
Date published: 8/19/21
Date added: 5/1/22
Journal: Nature Neuroscience
DOI: 10.1038/s41593-021-00905-6
Protocol: 10x Genomics Visium
Data source: GSE165098
Species: mouse
Number of samples: 6
Region: Whole brain
Figure: Astrocytes undergo a fast inflammatory transition that drastically changes over time.
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ssREAD sample ID: ST00801
Sample raw name: GSM5026144
Total spots in the plot: 582
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| Gene name | Log fold-change | target_domain | Adjusted p-value | in_group_fraction | out_group_fraction | in_out_group_ratio | in_group_mean_exp | out_group_mean_exp |
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Note: The MAST package were used to calculate DEGs on normalized gene expression data (parameter: log2FC > 0.25, adj.p-value < 0.05).
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