Title: A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
Authors: Anoushka Joglekar, Andrey Prjibelski, Ahmed Mahfouz, Paul Collier, Susan Lin, Anna Katharina Schlusche, Jordan Marrocco, Stephen R. Williams, Bettina Haase, Ashley Hayes, Jennifer G. Chew, Neil I. Weisenfeld, Man Ying Wong, Alexander N. Stein, Simon A. Hardwick, Toby Hunt, Qi Wang, Christoph Dieterich, Zachary Bent, Olivier Fedrigo, Steven A. Sloan, Davide Risso, Erich D. Jarvis, Paul Flicek, Hagen U. Tilgner
Date published: 1/19/21
Date added: 5/1/22
Journal: Nature Communications
DOI: 10.1038/s41467-020-20343-5
Protocol: 10x Genomics Visium
Data source: GSE158450
Species: mouse
Number of samples: 11
Region: Whole brain
Figure: Short read clustering of P7 hippocampus and prefrontal cortex tissue recovers precursors to known adult cell-types..
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Note: The MAST package were used to calculate DEGs on normalized gene expression data (parameter: log2FC > 0.25, adj.p-value < 0.05).
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