Title: Cell type-specific inference of differential expression in spatial transcriptomics
Authors: Dylan M Cable, Evan Murray, Vignesh Shanmugam, Simon Zhang, Luli S Zou, Michael Diao, Haiqi Chen, Evan Z Macosko, Rafael A Irizarry, Fei Chen
Date published: 9/1/22
Date added: 12/1/23
Journal: Nature Methods
DOI: 10.1038/s41592-022-01575-3
Protocol: Slide-seqV2
Data source: SCP1663
Species: mouse
Number of samples: 32
Region: Cerebellum, hypothalamus
Figure: C-SIDE learns cell type-specific DE from spatial transcriptomics data.
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Note: The MAST package were used to calculate DEGs on normalized gene expression data (parameter: log2FC > 0.25, adj.p-value < 0.05).
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